Open Data Science at SIO

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Resource Guide
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If the data don't fit, you must admit, better check your code before you submit.

Upcoming Events

New Here?

Check out our resources page for an overview of our repositories and guides.

You may also be interested in these links to other tips/walkthroughs/courses.

Stay Informed!

Subscribe to our listserves for the latest news:

SIO Bioinformatics Users Group
SIO R Users Group

Open Science

Mozilla Science Lab
Unofficial Google Data Science Blog
Software Carpentry
Data Carpentry

Some Advice We Love

Good Enough Practices in Scientific Computing
10 Commandments for Good Data Management
Minimal Advice to Undergrads on Programming
Advanced Data Analysis from an Elementary Point of View

Git

Basic Github Guide
Github Pages
Effective pull requests and other good practices for teams using github
Happy Git and GitHub for the useR

PERL

One
Two
Three
Four

Python

One
Two
Three
Four

R

Introduction to R (free course)
Cookbook for R
Style Guide (Hadley Wickham)
Style Guide (Google)
How to write and debug an R function
RStudio cheat sheets
knitr: Elegant, flexible and fast dynamic report generation with R
Intro to R Markdown
Intro to Shiny
Writing your own R package
Data Carpentry -for- Biologists (in R)
Data wrangling, exploration, and analysis with R

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